RESEARCH

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Open collaborative writing with Manubot

Daniel S. Himmelstein, Vincent Rubinetti, David R. Slochower, Dongbo Hu, Venkat S. Malladi, Casey S. Greene, Anthony Gitter

PLOS Computational Biology · 04 Dec 2020 · doi:10.1371/journal.pcbi.1007128

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2023

The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species

Tim E Putman, Kevin Schaper, Nicolas Matentzoglu, Vincent P Rubinetti, Faisal S Alquaddoomi, ... , Damian Smedley, Peter N Robinson, Christopher J Mungall, Melissa A Haendel, Monica C Munoz-Torres

Nucleic Acids Research · 24 Nov 2023 · doi:10.1093/nar/gkad1082

Integration of 168,000 samples reveals global patterns of the human gut microbiome

Richard J. Abdill, Samantha P. Graham, Vincent Rubinetti, Frank W. Albert, Casey S. Greene, Sean Davis, Ran Blekhman

Cold Spring Harbor Laboratory · 11 Oct 2023 · doi:10.1101/2023.10.11.560955

2022

Hetnet connectivity search provides rapid insights into how two biomedical entities are related

Daniel S. Himmelstein, Michael Zietz, Vincent Rubinetti, Kyle Kloster, Benjamin J. Heil, ... David N. Nicholson, Yun Hao, Blair D. Sullivan, Michael W. Nagle, Casey S. Greene

GigaScience · 28 Dec 2022 · doi:10.1093/gigascience/giad047

MolEvolvR: A web-app for characterizing proteins using molecular evolution and phylogeny

Jacob D Krol, Joseph T Burke, Samuel Z Chen, Lo N Sosinski, Faisal S Alquaddoomi, ... Vincent P Rubinetti, Shaddai Amolitos, Kellen M Reason, John B Johnston, Janani Ravi

Cold Spring Harbor Laboratory · 22 Feb 2022 · doi:10.1101/2022.02.18.461833

2020

Open collaborative writing with Manubot

Daniel S. Himmelstein, Vincent Rubinetti, David R. Slochower, Dongbo Hu, Venkat S. Malladi, Casey S. Greene, Anthony Gitter

PLOS Computational Biology · 04 Dec 2020 · doi:10.1371/journal.pcbi.1007128

Constructing knowledge graphs and their biomedical applications

David N. Nicholson, Casey S. Greene

Computational And Structural Biotechnology Journal · 01 Jan 2020 · doi:10.1016/j.csbj.2020.05.017